https://cin-10.medizin.uni-tuebingen.de/eulerwiki/index.php?action=history&feed=atom&title=Data_Storage_and_Data_Structure 2026-05-14T21:27:47Z Revision history for this page on the wiki MediaWiki 1.41.0 https://cin-10.medizin.uni-tuebingen.de/eulerwiki/index.php?title=Data_Storage_and_Data_Structure&diff=127&oldid=prev 2022-02-01T10:14:22Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:14, 1 February 2022</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Ideally, you follow the name convention for these files (already set the names in Igor when you record):</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Ideally, you follow the name convention for these files (already set the names in Igor when you record):</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>SMP_M[#1]_[#2]R_[#3a3b]_[#4]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>SMP_M[#1]_[#2]R_[#3a3b]_[#4]<ins style="font-weight: bold; text-decoration: none;">(_[#5])</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Mouse number of that day, typically 1</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Mouse number of that day, typically 1</div></td></tr> </table>

Joesterle https://cin-10.medizin.uni-tuebingen.de/eulerwiki/index.php?title=Data_Storage_and_Data_Structure&diff=126&oldid=prev 2022-02-01T10:13:42Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:13, 1 February 2022</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8">Line 8:</td> <td colspan="2" class="diff-lineno">Line 8:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># L for left retina or R for right retina</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># L for left retina or R for right retina</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Cell layer (a) and number (b), e.g. GCL0</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Cell layer (a) and number (b), e.g. GCL0</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"># Stimulus, typically abbreviated (chirp, mb, noise)</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Pharmacology if you used any</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Pharmacology if you used any</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> </table>

Joesterle https://cin-10.medizin.uni-tuebingen.de/eulerwiki/index.php?title=Data_Storage_and_Data_Structure&diff=125&oldid=prev 2022-02-01T10:12:23Z

<p>Added data structure</p> <p><b>New page</b></p><div>When you record with the 2P setup you will generate data pairs of .smp and .smh files, the former is the data the latter is the header.<br /> <br /> Ideally, you follow the name convention for these files (already set the names in Igor when you record):<br /> <br /> SMP_M[#1]_[#2]R_[#3a3b]_[#4]<br /> <br /> # Mouse number of that day, typically 1<br /> # L for left retina or R for right retina<br /> # Cell layer (a) and number (b), e.g. GCL0<br /> # Pharmacology if you used any<br /> <br /> For example: SMP_M1_LR_GCL0_chirp<br /> <br /> <br /> When you put your data on the Euler Storage your file structure should typically look like this (comments marked with #). Note that some files will only be created when you preprocess the data in Igor which is typically not done on the same day.<br /> <br /> * 20220315 # Date: yyyymmdd<br /> ** 1 # All data for the left retina<br /> *** Raw # Recorded data<br /> **** SMP_M1_LR_GCL0_chirp.smh<br /> **** SMP_M1_LR_GCL0_chirp.smp<br /> **** SMP_M1_LR_GCL0_mb.smh<br /> **** SMP_M1_LR_GCL0_mb.smp<br /> **** SMP_M1_LR_GCL1_chirp.smh<br /> **** SMP_M1_LR_GCL1_chirp.smp<br /> **** ...<br /> *** Pre # This is where the preprocessed files go<br /> **** SMP_M1_LR_GCL0.h5<br /> **** ...<br /> *** 20220315_.ini # Header file for left retina, create in Igor during preprocessing<br /> *** exp_20220315.pxp # Igor experiment saved before closing the ROI window so that you can modify the ROIs still<br /> ** 2 # All data for the right retina, otherwise as in folder 1<br /> *** ...</div>

Joesterle